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Concurvity of an estimated GAM

Source: R/concurvity.R, R/gamm4-methods.R, R/scam-methods.R
model_concurvity.Rd

Concurvity of an estimated GAM

Usage

model_concurvity(model, ...)

# S3 method for class 'gam'
model_concurvity(
  model,
  terms = everything(),
  type = c("all", "estimate", "observed", "worst"),
  pairwise = FALSE,
  ...
)

concrvity(
  model,
  terms = everything(),
  type = c("all", "estimate", "observed", "worst"),
  pairwise = FALSE,
  ...
)

# S3 method for class 'gamm4'
model_concurvity(model, ...)

# S3 method for class 'scam'
model_concurvity(model, ...)

Arguments

model

a fitted GAM. Currently only objects of class "gam" are supported

...

arguments passed to other methods.

terms

currently ignored

type

character;

pairwise

logical; extract pairwise concurvity of model terms?

See also

gamm4_support

Examples

## simulate data with concurvity...
library("tibble")
load_mgcv()
set.seed(8)
n <- 200
df <- tibble(
  t = sort(runif(n)),
  x = gw_f2(t) + rnorm(n) * 3,
  y = sin(4 * pi * t) + exp(x / 20) + rnorm(n) * 0.3
)

## fit model
m <- gam(y ~ s(t, k = 15) + s(x, k = 15), data = df, method = "REML")

## overall concurvity
o_conc <- concrvity(m)
draw(o_conc)


## pairwise concurvity
p_conc <- concrvity(m, pairwise = TRUE)
draw(p_conc)