ggplot-based plot for objects of class "anosim"

Produces a multi-layer ggplot object representing the output of objects produced by vegan::anosim().

Usage

# S3 method for class 'anosim'
autoplot(
  object,
  notch = TRUE,
  varwidth = TRUE,
  xlab = NULL,
  ylab = NULL,
  title = "Analysis of similarities",
  subtitle = NULL,
  caption = bquote(R == .(r) * "," ~ P == .(p)),
  ...
)

Arguments

object: an object of class "anosim", the result of a call to vegan::anosim().
notch: logical; make notched (default) or standard box plot?
varwidth: logical; make box width proportional to the square-root of the number of observations in the group (default)?
xlab: character; label for the x-axis.
ylab: character; label for the y-axis.
title: character; title for the plot.
subtitle: character; subtitle for the plot.
caption: character; caption for the plot.
...: additional arguments passed to other methods.

Value

A ggplot object.

Author

Didzis Elferts. Modifications by Gavin L. Simpson.

Examples


library("vegan")
#> Loading required package: permute

data(dune)
data(dune.env)
dune.dist <- vegdist(dune)
dune.ano <- with(dune.env, anosim(dune.dist, Management))

autoplot(dune.ano, notch = FALSE)